SimPrily
latest
Contents:
Introduction
Use Cases
Install and Environment Set up
Usage
High Throughput Computing
Calculating summary statistics on real data
Where to run SimPrily
Benchmarking
Tutorial with Docker
For Developers
SimPrily
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Welcome to SimPrily’s documentation!
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Welcome to SimPrily’s documentation!
¶
Contents:
Introduction
Use Cases
Install and Environment Set up
Usage
Required Input
Optional Input
Command line argument to run
How to run with a Container
Examples
Additional information on input arguments
ID
output_dir
param_file.txt
model_file.csv
High Throughput Computing
Open Science Grid
Test with interactive Singularity container
Submit a Pegasus workflow
Monitoring and Debugging
How the Pegasus workflow works
Recommendations for other HTC workflows
Calculating summary statistics on real data
Data format
Usage
Where to run SimPrily
Benchmarking
Tutorial with Docker
1. Define your simulation
2. Create input files
3. Perform test simulation
a. Pull Docker image
b. Run SimPrily
4. Perform HTC simulations
a. Estimate the required resources
b. Decide where to run your simulations
c. Run in parallel on large server
d. Run as workflow on Open Science Grid
For Developers
Install and Environment Set up
Container
Open Science Grid Connect
Virtual environment
Local installation
Additional Information on Containers
Docker
Singularity
Testing
Creating Documentation
Resources
Other Notes
Indices and tables
¶
Index
Module Index
Search Page
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