Welcome to SimPrily’s documentation!

Contents:

• Introduction
• Use Cases
• Install and Environment Set up
• Usage
  • Required Input
  • Optional Input
  • Command line argument to run
    • How to run with a Container
    • Examples
  • Additional information on input arguments
    • ID
    • output_dir
    • param_file.txt
    • model_file.csv
• High Throughput Computing
  • Open Science Grid
    • Test with interactive Singularity container
    • Submit a Pegasus workflow
    • Monitoring and Debugging
    • How the Pegasus workflow works
  • Recommendations for other HTC workflows
• Calculating summary statistics on real data
  • Data format
  • Usage
• Where to run SimPrily
• Benchmarking
• Tutorial with Docker
  • 1. Define your simulation
  • 2. Create input files
  • 3. Perform test simulation
    • a. Pull Docker image
    • b. Run SimPrily
  • 4. Perform HTC simulations
    • a. Estimate the required resources
    • b. Decide where to run your simulations
    • c. Run in parallel on large server
    • d. Run as workflow on Open Science Grid
• For Developers
  • Install and Environment Set up
    • Container
    • Open Science Grid Connect
    • Virtual environment
    • Local installation
  • Additional Information on Containers
    • Docker
    • Singularity
  • Testing
  • Creating Documentation
    • Resources
  • Other Notes

Indices and tables

• Index
• Module Index
• Search Page